- We organized a tutorial at ISMB, I also gave a presentation on Phlag at EvolCompGen.
- I gave a RECOMB talk on DecoDiPhy (Shayesteh Arasti’s work) and on gdiff at RECOMB-seq in Selanik, Greece.
- I presented a poster on sequence distances and “phylogenomic” pattern matching at ProbGen 2026.
- krepp appears in Genome Biology.
- I gave a tutorial (slides) on krepp and a short talk (also a poster) on Phlag IMSI workshop on large-scale alignments and phylogenies.
- I presented our latest tool for phylogenetic placement in RECOMB 2025 I really enjoyed RECOMB 2025 in Seoul. This was my first time in East Asia. I enjoyed it. The conference coincided with… Read I presented our latest tool for phylogenetic placement in RECOMB 2025 ›
- FlyVISTA, employing basty, appears in Science Advances.
- Our paper has been accepted in RECOMB 2025 Our paper titled “A k-mer-based maximum likelihood method for estimating distances of reads to genomes enables… Read Our paper has been accepted in RECOMB 2025 ›
- Our paper has been published in Genome Research KRANK has been published in Genome Research (RECOMB 2024 Special Issue). The tool is available at GitHub, together with… Read Our paper has been published in Genome Research ›
- I attended RECOMB 2024 and presented KRANK I gave a talk on KRANK in RECOMB 2024. My RECOMB 2024 slides are available. … Read I attended RECOMB 2024 and presented KRANK ›
- I gave a talk in BioSys 2024 I presented KRANK in BioSys 2024 (Workshop on Emerging Computer Systems Challenges and Applications in Biomedicine),… Read I gave a talk in BioSys 2024 ›
- CONSULT-II has been published in Bioinformatics After a long review process, CONSULT-II finally appeared in Bioinformatics. I think CONSULT-II is conceptually very… Read CONSULT-II has been published in Bioinformatics ›
- KRANK has been accepted in RECOMB 2024 Our paper titled “Memory-bound k-mer selection for large evolutionary diverse reference libraries” has been accepted to… Read KRANK has been accepted in RECOMB 2024 ›
- MuDCoD has been published in Bioinformatics We published a paper in Bioinformatics. We describe a new approach for community detection in multi-subject and dynamic… Read MuDCoD has been published in Bioinformatics ›
- Our paper has been published in Natural Language Engineering We just published a paper in Natural Language Engineering after a long revision process. This work was a continuation… Read Our paper has been published in Natural Language Engineering ›
- CONSULT-II won the best paper award I presented in RECOMB Comparative Genomics 2023, in Istanbul (see my slides). Our paper, with Elenora Rachtman and… Read CONSULT-II won the best paper award ›
- I defended my MSc thesis, “Automated behavioral analysis of asleep fruit fly” (slides). It is now available online.
- I presented a poster and a spotlight talk on MuDCoD at MLCB 2021.
News
Announcements for papers & talks and other news.