Talks
- Contemporary Challenges in Large-Scale Sequence Alignments & Phylogenies
IMSI (UChicago), Chicago [August, 2025]
‣ Read-genome distance calculation & phylogenetic placement using krepp (tutorial)
[slides, recording]
‣ Mapping strongly discordant regions on the genome using hidden Markov models (short talk)
[slides, recording]
-
RECOMB 2025
Yonsei University, Seoul [April, 2025]
‣ Estimating read-genome distances using homologous k-mers (and genome-wide phylogenetic placement)
[slides] -
RECOMB 2024
MIT, Boston [April, 2024]
‣ Memory-bound and taxonomy-aware k-mer selection for large reference databases
[slides] -
BioSys 2024 (in conjunction with ASPLOS 2024)
La Jolla [April, 2024]
‣ Memory-bound and taxonomy-aware k-mer selection for large reference databases
[slides, recording] -
RECOMB-CG 2023
ITU, Istanbul [April, 2023]
‣ CONSULT-II: Taxonomic identification using locality sensitive hashing
[slides] -
MLCB 2021
Virtual Conference [October, 2021]
‣ MuDCoD: Multi-subject community detection in dynamic gene networks
[slides] -
Signal Processing and Communications Applications (SIU) 2020
Virtual Conference [September, 2020]
‣ Active Learning for Turkish Text Classification