Presentations

Talks

• Contemporary Challenges in Large-Scale Sequence Alignments & Phylogenies
  IMSI (UChicago), Chicago [August, 2025]

  • Read-genome distance calculation & phylogenetic placement using krepp (tutorial) [slides][recording]
  • Mapping strongly discordant regions on the genome using hidden Markov models (short talk) [slides][recording]

• RECOMB 2025 - Yonsei University, Seoul [April, 2025]

  • Estimating read-genome distances using homologous k-mers (and genome-wide phylogenetic placement) [slides]

• RECOMB 2024 - MIT, Boston [April, 2024]

  • Memory-bound and taxonomy-aware k-mer selection for large reference databases [slides]

• BioSys 2024 (in conjunction with ASPLOS 2024) - La Jolla [April, 2024]

  • Memory-bound and taxonomy-aware k-mer selection for large reference databases [slides][recording]

• RECOMB-CG 2023 - ITU, Istanbul [April, 2023]

  • CONSULT-II: Taxonomic identification using locality sensitive hashing [slides]

• MLCB 2021 - remote [October, 2021]

  • MuDCoD: Multi-subject community detection in dynamic gene networks [slides]

• Signal Processing and Communications Applications (SIU) 2020 - remote [September, 2020]

  • Active Learning for Turkish Text Classification